PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0658160.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-X1
Protein Properties Length: 1121aa    MW: 120977 Da    PI: 8.1218
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0658160.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.84.1e-07308326119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+Cq++CH GpC+pC+
  Lj2g3v0658160.1 308 CGRHRCQQTCHVGPCGPCQ 326
                      ******************6 PP
2zf-NF-X1186.5e-06430447118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CGkH+C++ CH G+CppC
  Lj2g3v0658160.1 430 CGKHTCKEHCHVGECPPC 447
                      ****************** PP
3zf-NF-X118.16e-06526544119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H C++lCH G CppC 
  Lj2g3v0658160.1 526 CGQHACESLCHSGHCPPCL 544
                      ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.24E-6130200No hitNo description
PROSITE profilePS500168.6138199IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.214141197IPR001841Zinc finger, RING-type
PROSITE patternPS013590141196IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.90E-5230291No hitNo description
SMARTSM004380.023253271IPR000967Zinc finger, NF-X1-type
PfamPF014228.4255270IPR000967Zinc finger, NF-X1-type
CDDcd060081.59E-11298346No hitNo description
PfamPF014229.6E-6308325IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4E-4308327IPR000967Zinc finger, NF-X1-type
CDDcd060082.99E-8362408No hitNo description
PfamPF014220.0079372389IPR000967Zinc finger, NF-X1-type
SMARTSM004383.1E-4372391IPR000967Zinc finger, NF-X1-type
CDDcd060081.46E-11420466No hitNo description
PfamPF014222.6E-4430447IPR000967Zinc finger, NF-X1-type
SMARTSM004383.9E-4430449IPR000967Zinc finger, NF-X1-type
PfamPF014229.3488499IPR000967Zinc finger, NF-X1-type
SMARTSM00438260488522IPR000967Zinc finger, NF-X1-type
CDDcd060081.77E-8516559No hitNo description
PfamPF014221.1E-4526543IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4526545IPR000967Zinc finger, NF-X1-type
SMARTSM004380.72583601IPR000967Zinc finger, NF-X1-type
PfamPF014221.3636651IPR000967Zinc finger, NF-X1-type
SMARTSM004381.7636666IPR000967Zinc finger, NF-X1-type
SMARTSM004380.028675696IPR000967Zinc finger, NF-X1-type
PfamPF014222.3676694IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3306.1E-6908963IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1121 aa     Download sequence    Send to blast
MSLQSRRERR DRPRVPSQAA AAAAPRQQWV PRGSAAGGGA SSNNTVLPPQ PSISIPHPYQ  60
NAVAAGSSDQ GVAAAVAAAA PPAAAHRRNN QKVERERERE RERDRGKSRN QPGREVGLRD  120
TSLPQLVQEI QEKLMRGTVE CMICYDMVGR SAAIWSCSSC YSIFHLSCIK KWARAPTSVD  180
LTADKDQGFN WRCPGCQYVQ RTSHREIRYV CFCGKRPDPP SDLYLTPHSC GEPCGKPLEK  240
EVLAAGGRED DLCPHVCVLQ CHPGPCPPCK AFAPPRLCPC GKKRITTRCS DRKSVLTCGQ  300
CCDKLLECGR HRCQQTCHVG PCGPCQVLFK ASCFCSKTTE VLGCGDMVVK GELKEEGGVF  360
SCSSSCGKKL GCGNHVCSDM CHPGSCGECE LLPSRVKTCC CGKTRLEVDR ESCLDPIPTC  420
SQVCDKLLHC GKHTCKEHCH VGECPPCLVL VSQKCRCSST SRTVECFKTV MENQMFTCEK  480
PCGRKKNCGR HRCSEKCCPL SNPNNNLREG WDPHFCSMPC GKKLRCGQHA CESLCHSGHC  540
PPCLETIFTD LSCACGRTSI PPPLPCGTPP PSCQLPCSVA QPCGHAGSHS CHFGDCIPCP  600
VPVAKECIGG HVVLRNIPCG SKDIRCNNPC GRTRQCGLHA CGRTCHPPPC DSLSGGVQGF  660
QAPCGQTCSA PRRDCRHTCM APCHPSSPCP DIKCEFPVTI TCSCGRITAS VPCDAGGSIS  720
NYNADAIHEA SIVQKLPVPL QPVDSNGRKV PLGQRKLMCD EECAKYERKK VLADAFDITS  780
GLDSLHFAES SVSELLSDMF RRDPKWVLAV EERCKFLVLG KSRGTTHGLK VHVFCPMLKD  840
KRDAVRLIAE RWKLAVNAAG WEPKRFIVIS VTQKSKAPAR VLGVKGTTTL NTLFPPAFDP  900
LVDMDPRLVV SFPDLPRDAD ISALVLRFGG ECELVWLNDK NALAVFHDPA RAATAMRRLD  960
HGKVYQGAVS VVPNAGASAA SSATNAWGGT GTVKEGGALT ALKGNPWKKA VVQEAGRKED  1020
SWGDEEWATT GSANIQPSVL KKAAPITASL NRWNVLNQES SSSSSVTTGR AEVSGKQKES  1080
SAVSKSVSDA GGSNEEGKQH GDNSDAAEVP EVVDDWEKAY E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194106RERERERERDRGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.68110.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0658160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096500.0AP009650.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT01H08, TM0053, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512772.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S2Z0B80.0A0A1S2Z0B8_CICAR; NF-X1-type zinc finger protein NFXL1
STRINGXP_004512772.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1