PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v0738560.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 114aa MW: 12355.4 Da PI: 8.996

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v0738560.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.4	9.3e-28	16	112	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++dC+++p++ pa+q++++ +++k++G++ +l+ll+++p++ ++++++sl+yeA+ r+ +P+ G++g++++++++l++ Lj2g3v0738560.1 16 SCNGCRVLRKGCSPDCPIRPCLnwidsPASQANATFFLAKFYGRAGLLNLLTSAPQQLQPAVFKSLLYEACGRIVNPIFGSTGLLSTGSWHLCE 109 6********************************************************************************************9 PP DUF260 90 lka 92 +++ Lj2g3v0738560.1 110 AAV 112 875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.472	15	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-23	16	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MCSSPFNKKI QTMRLSCNGC RVLRKGCSPD CPIRPCLNWI DSPASQANAT FFLAKFYGRA 60 GLLNLLTSAP QQLQPAVFKS LLYEACGRIV NPIFGSTGLL STGSWHLCEA AVNA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.20917	0.0	cell culture\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v0738560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015966681.1	4e-58	LOB domain-containing protein 41
Refseq	XP_025701105.1	5e-58	LOB domain-containing protein 41
Swissprot	Q9ZW96	2e-53	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A445D2Q9	1e-56	A0A445D2Q9_ARAHY; Uncharacterized protein
STRING	XP_007151649.1	3e-55	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	1e-55	LOB domain-containing protein 40