PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0911670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HRT-like
Protein Properties Length: 474aa    MW: 53152.2 Da    PI: 10.0892
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0911670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.87.6e-18267297131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCGv+l+dGs+C+++P+++R RC eHKGmR+
  Lj2g3v0911670.1 267 ICGVTLGDGSICRKPPAEKRLRCPEHKGMRT 297
                      8*****************************5 PP
2HRT-like57.13e-18345374130
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                      iCG+ l++G +C+r+PvkgRKRC+eHKGmR
  Lj2g3v0911670.1 345 ICGIVLDNGFPCRREPVKGRKRCQEHKGMR 374
                      8****************************9 PP
3HRT-like61.21.6e-19435465131
         HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                      iCG+il+dGs+C+rqPvkgRKRC eHKG+Ri
  Lj2g3v0911670.1 435 ICGIILDDGSTCRRQPVKGRKRCLEHKGRRI 465
                      8*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004650.001878175IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MVAAAVNNRL KREQCDRTKH DSNFSHWKIL IGPSDWEDFS KGKEGSARYR IHNLHKNSGS  60
GVYELGIAVS RSGLGREIYK LVAADPQRVV VVYLGEADNV RARLQCYGRS GAHLGNSGSD  120
DASPQKGRPL FQEIFSQGFP IVYRWAPMQN KEDALRTEAQ LLDTFDYAWN TSNNGTRRPD  180
DILRMLNKIA SSTRTFSDVA KVLLPFTQRQ VGIQIESSKL PLANDKSDDE ADSGSNNFLS  240
RVFKFNRSRP RIVQDITSGV IQENAKICGV TLGDGSICRK PPAEKRLRCP EHKGMRTNVS  300
TAKAIKAPES KSVSYRYQNA SHDIKDPPQT LVERPVDEII TQTNICGIVL DNGFPCRREP  360
VKGRKRCQEH KGMRRNVSTA KVIKAPKSED IVLPYEFPQT EGNGYRYQNV SHDVKDPPQA  420
LVGSPVGEII NNTNICGIIL DDGSTCRRQP VKGRKRCLEH KGRRIRASFH VNQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.30700.0protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0911670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020239993.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A371G1100.0A0A371G110_MUCPR; Pentatricopeptide repeat-containing protein, mitochondrial (Fragment)
STRINGXP_007152922.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.15e-95effector of transcription2