PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v0914370.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 1042aa    MW: 116181 Da    PI: 6.9793
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v0914370.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.13e-2231132199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++lt +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Lj2g3v0914370.1  31 FCKQLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELTARDLHDTPWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RD 120
                      99*****************************954.4444.48************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  Lj2g3v0914370.1 121 EKQQLLLGIRRA 132
                      88889****997 PP
2Auxin_resp122.82.5e-40157240183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++gv+dldpvrW+nS+Wr+L+
  Lj2g3v0914370.1 157 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYYKAVYsHQISPGMRFRMMFETEDSGTRRYMGTITGVNDLDPVRWKNSQWRNLQ 240
                      79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-4320160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-4122146IPR015300DNA-binding pseudobarrel domain
CDDcd100176.40E-1830122No hitNo description
PROSITE profilePS5086311.74431133IPR003340B3 DNA binding domain
PfamPF023622.6E-2031132IPR003340B3 DNA binding domain
SMARTSM010194.3E-2131133IPR003340B3 DNA binding domain
PfamPF065074.9E-35157240IPR010525Auxin response factor
PfamPF023096.9E-89291015IPR033389AUX/IAA domain
PROSITE profilePS5174528.4129301014IPR000270PB1 domain
SuperFamilySSF542772.88E-79471008No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MTLQPVPSFD KDALLRSDLA LKSSKPQPEF FCKQLTASDT STHGGFSVPR RAAEKIFPPL  60
DFSMQPPAQE LTARDLHDTP WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD  120
EKQQLLLGIR RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPSEF  180
VIPLAKYYKA VYSHQISPGM RFRMMFETED SGTRRYMGTI TGVNDLDPVR WKNSQWRNLQ  240
VGWDESTAGE KRSRVSIWEI EPVTAPFFIC PPPFFRSKRP RQPGLHDDES SDFDNLFKRT  300
MPWLGDDMSM KDPQGLPGLS LVQWMNLQQN PASANSLQPN YVPSFSGSVL QNLPGADFHR  360
QLGFSSPQLS QPHNVPFNAQ RLLQTAQQLD HLQKLPSTSS TSGTILQQQS GDITQQTRPN  420
MANQTLPHSQ AQAQLLYPQN LVQTNNILQQ QQPSIQNHQL HRNLSQNPPQ QLQQQQQQQQ  480
QHQQQQQQQQ HQQHQQHQQQ QQQIVTGLNQ QQSLTQSPIP EHHQQFQVSD NQIQFQLLQK  540
LQQQQKQMLL AQQSALQQPT QFTQFQDQQR HLLDKTQNLS KTPIPGQVLE NPSILQNSLS  600
EANSITLQMA KANGRNDIQY SHLSQQPKLQ HQHSGLLSEM SGHMALPPTP TTNQHSAAGS  660
SRLTGAAGAA QSVITDDVPS CSTSPSTNNC TNALPQLINS HLHRSTMLGD DMAQSAATIL  720
SSSALETVSS NANLLKDLHP HSEVKASLNI SKNQNQGNFV SQTYLNSGAA PTDCLDTSSS  780
TSVCLSQNDV HMHQINNPLS YNPQSMFFRD NSRDGEVQAD GRSNIPYVNN IDSQMRMPPN  840
TDSDLTKGTL GLAKDLSSNF SSGGMLGNYE NNKDAQQELS SSMVSQTFGV PDMTFNSIDS  900
TIDDSSFLNG DPWGPQPAPP PPPAQFQRMR TYTKVYKRGA VGRSIDIARY SGYEELKQDL  960
ARRFGIEGQL EDRQRIGWKL VYVDHEGDVL LVGDDPWEEF VNCVRCIKIL SPQEVQQMSL  1020
DGDFGSGGLP NQACSSSDGG NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1231261128388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.7710.0cell culture| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v0914370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063390.0AP006339.2 Lotus japonicus genomic DNA, chromosome 2, clone: LjT16A21, TM0373, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027357893.10.0auxin response factor 19-like
RefseqXP_027357894.10.0auxin response factor 19-like
RefseqXP_027357895.10.0auxin response factor 19-like
TrEMBLV7C4C00.0V7C4C0_PHAVU; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-173auxin response factor 19