PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1058070.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 236aa    MW: 26042.1 Da    PI: 5.7633
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1058070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-112361248
                     HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
  Lj2g3v1058070.1  2 IIHLQALLGNR-WAAIAAYLP-QRTDNDIKNYWNTYL 36
                     5788899****.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.86140IPR017930Myb domain
CDDcd001675.47E-8136No hitNo description
SMARTSM007170.0023138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-15137IPR009057Homeodomain-like
PfamPF002492.1E-10236IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-10242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MIIHLQALLG NRWAAIAAYL PQRTDNDIKN YWNTYLKKRL NKLQTGAADG TLGHAGFSPI  60
SRPMPRGQWE RRLQTDIHMA KKALSEALSP NNNTFTLLPE SNSTLSSESS FCSTKQTQSS  120
PCYASSADNI ARLLKGWMKK SPKGSCSKTL NDTDSTSEGY SIVAKGSNNC VELNETFESL  180
FGYNESLDSL NSESPEATLF QDESKPAGVG AEMPFSLLEQ WLLDDAGYQE KLSLLQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.258570.0floral bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1058070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1377080.0BT137708.1 Lotus japonicus clone JCVI-FLLj-17B11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438904.12e-97PREDICTED: transcription factor MYB30
TrEMBLI3SB611e-171I3SB61_LOTJA; Uncharacterized protein
STRINGXP_007151227.11e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.14e-47myb domain protein 30