PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1058120.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ZF-HD

Protein Properties

Length: 208aa MW: 22328 Da PI: 8.773

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1058120.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.5	1.6e-33	64	121	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNh aslGgha+DGCgEfmps++++ +++++kCaACgCHRnFHRre+ee Lj2g3v1058120.1 64 TVTYKECLKNHVASLGGHALDGCGEFMPSPTATaDDPSSIKCAACGCHRNFHRREPEE 121 699*************************999889****************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.0E-28	65	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-23	65	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.3E-30	66	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.54	67	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEVLTTATNN ITSTAKSPEP ETETPTRIQQ PGNVNATAKP LSFSNGVLKR HHPPAPHANH 60 SPVTVTYKEC LKNHVASLGG HALDGCGEFM PSPTATADDP SSIKCAACGC HRNFHRREPE 120 EPPITAAHHV FEYQPHHRHH PPPPVPFNRS PNSASPPPIS SYPSAPHMLL ALSGAGLPVP 180 PENTAAPTQT PGSDSRKRFR TKFTPGQK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.12844	1e-120	cell culture

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1058120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010571	0.0	AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence.
GenBank	AP010572	0.0	AP010572.1 Lotus japonicus genomic DNA, clone: LjT38M11, TM1877, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027358362.1	1e-81	zinc-finger homeodomain protein 9
TrEMBL	A0A1S2XQ38	6e-68	A0A1S2XQ38_CICAR; zinc-finger homeodomain protein 9
STRING	XP_004491795.1	1e-68	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	7e-42	homeobox protein 30