PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1068520.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 42aa    MW: 4501.2 Da    PI: 8.5178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1068520.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-081241130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +g+W++ Ed+ll  +v ++G g W++++++
  Lj2g3v1068520.1 12 KGAWSKVEDDLLTACVLKYGEGKWHLVPSR 41
                     79************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.865742IPR017930Myb domain
SuperFamilySSF466895.23E-7940IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-9941IPR009057Homeodomain-like
PfamPF002493.8E-61241IPR001005SANT/Myb domain
CDDcd001671.84E-41441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 42 aa     Download sequence    Send to blast
MEGVGGSLGV RKGAWSKVED DLLTACVLKY GEGKWHLVPS RA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1068520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019426716.12e-15PREDICTED: transcription factor MYB90-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56650.18e-14production of anthocyanin pigment 1