PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1105380.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17826.4 Da    PI: 10.3546
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1105380.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.5e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ienk+ rqvtfskRr g+ KKA+E+SvLCda+va+++f ++g+lye+ss
  Lj2g3v1105380.1  9 KQIENKTSRQVTFSKRRMGLRKKAHEISVLCDAQVALLVFNTKGRLYEFSS 59
                     78***********************************************96 PP
2K-box70.45.7e-2478154581
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                      + + +++++  +++ e  kL  ++e L++++R++ G dL++L+l+eLq Le+qL+++l++iR++Kn ++ e+i+elq
  Lj2g3v1105380.1  78 QLVGADKEQPRNWSLECFKLTGRVEVLEKSIRNIAGHDLDPLNLRELQGLEHQLDTALRRIRTRKNTVVNESISELQ 154
                      5566789999****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1370.107.6E-4134IPR004088K Homology domain, type 1
SMARTSM004321.5E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-30276IPR002100Transcription factor, MADS-box
CDDcd002653.35E-36276No hitNo description
PRINTSPR004041.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-1985154IPR002487Transcription factor, K-box
PROSITE profilePS5129711.44387154IPR002487Transcription factor, K-box
Gene3DG3DSA:3.30.1370.107.6E-493111IPR004088K Homology domain, type 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGRGRVQLKQ IENKTSRQVT FSKRRMGLRK KAHEISVLCD AQVALLVFNT KGRLYEFSSE  60
SSIENVLERY ERHTQAVQLV GADKEQPRNW SLECFKLTGR VEVLEKSIRN IAGHDLDPLN  120
LRELQGLEHQ LDTALRRIRT RKNTVVNESI SELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19176175Myocyte-specific enhancer factor 2B
1tqe_Q2e-19176175Myocyte-specific enhancer factor 2B
1tqe_R2e-19176175Myocyte-specific enhancer factor 2B
1tqe_S2e-19176175Myocyte-specific enhancer factor 2B
6c9l_A2e-19176175Myocyte-specific enhancer factor 2B
6c9l_B2e-19176175Myocyte-specific enhancer factor 2B
6c9l_C2e-19176175Myocyte-specific enhancer factor 2B
6c9l_D2e-19176175Myocyte-specific enhancer factor 2B
6c9l_E2e-19176175Myocyte-specific enhancer factor 2B
6c9l_F2e-19176175Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1105380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431670.0BT143167.1 Lotus japonicus clone JCVI-FLLj-18D7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027357554.15e-87truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN65e-70FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLI3SRR91e-107I3SRR9_LOTJA; Uncharacterized protein
STRINGGLYMA13G06811.18e-82(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.19e-67AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]