PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1168860.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 304aa    MW: 34015.8 Da    PI: 6.6497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1168860.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05121140120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r  n++ H+
  Lj2g3v1168860.1 121 FSCTVCNKMFNRYNNMQMHM 140
                      89*****************9 PP
2zf-C2H213.90.00017206228123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk+F  + + ++H +++
  Lj2g3v1168860.1 206 FGCRKCGKPFAVRGDWRTHEKNC 228
                      56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.57E-5117142No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5121140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055121148IPR007087Zinc finger, C2H2
PfamPF128742.0E-4121140No hitNo description
SMARTSM003550.19121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355200169201IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.33E-5189226No hitNo description
Gene3DG3DSA:3.30.160.607.2E-5192226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQAYHHSFSY ISSCEPDEAV DEASISLSLG PPGQHNPKIP SSKHPATTLH HQQNPTSDDD  60
HSGVTVALHI GLPTNISPTT DTTPISKPDH NQHHHLASSA PVQGQYWIPS PAQILIGPTQ  120
FSCTVCNKMF NRYNNMQMHM WGHGSQYRKG PESLRGAKPA SSMLRLPCYC CAEGCKNNID  180
HPRSRPLKDF RTLQTHYKRK HGAKPFGCRK CGKPFAVRGD WRTHEKNCGK LWFCICGSDF  240
KHKRSLKDHV RAFGDGHAPH TVESCDQMGD ELDLFGEDEE DEELEDDDED LFDDDNNNAG  300
GVCF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1168860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105620.0AP010562.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT29K03, TM1963, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362750.11e-157zinc finger protein WIP6-like
SwissprotQ9FX681e-118ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A371I1631e-157A0A371I163_MUCPR; Zinc finger protein WIP6 (Fragment)
STRINGXP_007153349.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-120C2H2-like zinc finger protein