PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1277700.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 388aa MW: 42901.5 Da PI: 8.1565

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1277700.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	94.2	1e-29	129	176	2	48
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalr.n 48 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa r n Lj2g3v1277700.1 129 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGARRkN 176 7899****************************************8734 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	126	174	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-24	131	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.701	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MSEVMKDSAI KLFGRTISLP HNRKVSANDS SSDHSPPSSS SSPGELSSAT KHEAERIEEP 60 SKKELITSTQ DKNLSHQSTE DSKSPTSSTI FENPKTPSSE RETSLLKSSK NGEQSETSES 120 QDNKGLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GARRKNKNIS 180 SSCSSAAASH YRQMMMMVPE TLQANEEAVL TFGSDSSPLC NSMASGLSLA DKTQPKALFH 240 APKQSIFVRE DSNGDDRTSS EKRGNFGSYE ESIDKNCQVF PPQFPFQGSS SIPWPYPWNP 300 AMPSPAFCQL NYPVPFYHAP AFWAHPHPIS PQSSANSPAL GKHSREGEIL FPSNSEKEKS 360 SSRSNGVLIP KTLRIDDPNE ASKSSIWS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MSEVMKDSAI KLFGRTISLP HNRKVSANDS SSDHSPPSSS SSPGELSSAT KHEAERIEEP  60
SKKELITSTQ DKNLSHQSTE DSKSPTSSTI FENPKTPSSE RETSLLKSSK NGEQSETSES  120
QDNKGLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG GARRKNKNIS  180
SSCSSAAASH YRQMMMMVPE TLQANEEAVL TFGSDSSPLC NSMASGLSLA DKTQPKALFH  240
APKQSIFVRE DSNGDDRTSS EKRGNFGSYE ESIDKNCQVF PPQFPFQGSS SIPWPYPWNP  300
AMPSPAFCQL NYPVPFYHAP AFWAHPHPIS PQSSANSPAL GKHSREGEIL FPSNSEKEKS  360
SSRSNGVLIP KTLRIDDPNE ASKSSIWS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1277700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027360334.1	1e-137	cyclic dof factor 1-like
TrEMBL	A0A1J7HNV8	1e-132	A0A1J7HNV8_LUPAN; Uncharacterized protein
STRING	XP_007157611.1	1e-124	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-55	cycling DOF factor 2