PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1277940.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ZF-HD

Protein Properties

Length: 146aa MW: 16263.7 Da PI: 8.6042

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1277940.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.5	8.8e-30	29	82	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +v YkeCl+NhAaslG+ha+DGCgEfmps + + l+C ACgCHRnFHRr++++ Lj2g3v1277940.1 29 AVSYKECLRNHAASLGAHALDGCGEFMPSAEP---RSQLTCPACGCHRNFHRRDTKQ 82 689***********************9444...588*************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-16	30	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.8E-26	30	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.0E-26	32	79	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.03	32	79	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MDLKTETPPP PTQHRHLITA TPSPPSTVAV SYKECLRNHA ASLGAHALDG CGEFMPSAEP 60 RSQLTCPACG CHRNFHRRDT KQQYSNLACP ERCSRFGCTT TRVDLPLRLG MRRRSMVVDM 120 AFNFLVILTI LTAEIAAPIN DHIHRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.4310	1e-101	pod

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1277940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217682.1	1e-27	zinc-finger homeodomain protein 9
TrEMBL	A0A151TFH0	5e-27	A0A151TFH0_CAJCA; ZF-HD homeobox protein At4g24660 family
STRING	GLYMA01G05810.1	9e-24	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	7e-23	homeobox protein 21