PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1278950.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 213aa    MW: 24543.3 Da    PI: 5.4871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1278950.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-104790755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     e Er+RR+++ +++  Lr+l+P       + ++Ka+i   A+ YIk+Lq
  Lj2g3v1278950.1 47 EYERKRREKLSTRLLMLRSLVPIV-----TNMNKATIIDDAITYIKELQ 90
                     77*********************8.....79*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-1640101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2274089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-1442102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-74590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-124695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-104994No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGHVYDDRLT ISLEELGFNA ENGSNRGRMG RRSYDDDAKT FKSKNLEYER KRREKLSTRL  60
LMLRSLVPIV TNMNKATIID DAITYIKELQ DQVETLTREL LQETEATSKE VAKPKINDFD  120
LAEEMKKWGI QEEVHVTKID GNKLWVKMII ENKRGSFKKL VEFLDTYGIA LIDTNLTAMK  180
GALLITTCIQ GMDGQTLEVE QINQWLLDIL RAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERKRRE
24954RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1278950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105582e-49AP010558.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT03A02, TM1616, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348379.13e-92transcription factor DYT1-like
TrEMBLV7BTB23e-81V7BTB2_PHAVU; Uncharacterized protein
STRINGXP_007148286.15e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-43bHLH family protein