PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1338880.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 257aa    MW: 28962.3 Da    PI: 9.3824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1338880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-172576155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Lj2g3v1338880.1 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 76
                     89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.14E-262586No hitNo description
PfamPF008472.5E-122576IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-182586IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-182685IPR001471AP2/ERF domain
PROSITE profilePS5103218.7552684IPR001471AP2/ERF domain
SMARTSM003801.1E-252690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQTVTKEEYL ASLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTQ  60
EEAARAYDIA AIEYRGIHAV TNFDLSTYIR WLRPGAHSNA ASQEQTPSIN PQPFTTSNLI  120
QTRGTTKVSN FNLHPFPGVE LEDHKKKQEI SQHVTTPLSP SNKSPSSTAL GLLLKSSVFR  180
ELSQRNLNYT NEEAEEIELK NTQQGNDGVG GNLNNKRACK TSYMCSSYRN SLPDLESPEE  240
TTMPLSLYHG TMFPPME
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1338880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104910.0AP010491.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT38H08, TM1534, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348154.11e-122AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A444ZUS61e-117A0A444ZUS6_ARAHY; Uncharacterized protein
STRINGGLYMA18G16236.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.23e-35ERF family protein