PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1436910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 220aa    MW: 24392.4 Da    PI: 5.5876
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1436910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-39371381101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC+++C++ap+f  +q p++fa+vhk+FGasnv+k+l ++p ++r++a+++++yeA+ar++dPvyG+v +il+lqqq+++l+++
  Lj2g3v1436910.1  37 PCGACKFLRRKCSSECIFAPHFDPDQgPARFAAVHKVFGASNVSKFLMNIPMNRRDEAVTTICYEAQARLSDPVYGCVPTILNLQQQVASLQEQ 130
                      7*********************777769****************************************************************** PP

           DUF260  94 lallkeel 101
                      l +l++++
  Lj2g3v1436910.1 131 LTMLQTQI 138
                      **999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.08436138IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-4037135IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSEQQGGDGT STVRRRGATS RRGMATPDIE AAAPTGPCGA CKFLRRKCSS ECIFAPHFDP  60
DQGPARFAAV HKVFGASNVS KFLMNIPMNR RDEAVTTICY EAQARLSDPV YGCVPTILNL  120
QQQVASLQEQ LTMLQTQIIH GSLAYPNVLQ STQEQQHTNI GFQSAYPNFN PGFDYAMETA  180
PSSHNLEPVQ FSQLPKYEEE DEEECKIPPL LNNDIVFPRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-35321391112LOB family transfactor Ramosa2.1
5ly0_B1e-35321391112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1436910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019428564.19e-81PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV36e-57LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0B2PE623e-82A0A0B2PE62_GLYSO; LOB domain-containing protein 20
STRINGGLYMA10G11031.13e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-59LOB domain-containing protein 20