PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1439670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 253aa    MW: 27651.9 Da    PI: 7.6345
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1439670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.7e-3256111359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      k rY+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHRre+++
  Lj2g3v1439670.1  56 KGRYRECLKNHAVGIGGHALDGCGEFMPA-GSEGTLDALKCAACNCHRNFHRRENDS 111
                      569*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2357111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-3058108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.2E-2958109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.75259108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.7E-31180252IPR009057Homeodomain-like
SuperFamilySSF466891.79E-18180251IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-26190246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEFEDQEEQE EELCMATAPS YDSLTHPSRV KMPGGGAEPI MAHPLRNNSS NNGAAKGRYR  60
ECLKNHAVGI GGHALDGCGE FMPAGSEGTL DALKCAACNC HRNFHRREND SSNSPGDGGQ  120
FLLTHLPHVP PPPPQFQAYY GRGPAGYLHM SGQHRVGAGT LALPSISGGG GPREDQEDIS  180
NLSAGGGSSK KRFRTKFTQE QRDKMLDLAE RLGWRMQKHD EGVVQDFCNE TGVKRHVLKV  240
WMHNNKHTLG KKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-251892481675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.85020.0cell culture| floral bud| flower
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1439670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020216790.11e-121zinc-finger homeodomain protein 1
SwissprotA2Z2596e-77ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A371HWR21e-111A0A371HWR2_MUCPR; Zinc-finger homeodomain protein 1 (Fragment)
STRINGXP_004489767.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-69homeobox protein 22