PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1450690.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25571.2 Da    PI: 6.264
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1450690.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+i+n + rqvtfskRr g++KKAeELSvLCda+va+++fsstgkl+eys+
  Lj2g3v1450690.1  9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEYSN 59
                     68***********************************************95 PP
2K-box51.64e-18931712098
            K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + ++L+ke+ +  r +R+l GedL+ L+++eLqqLe+ Le++l ++ +kK e ++++i+ lq k k+l een++L++ +
  Lj2g3v1450690.1  93 NCSRLNKEVAEQSRLLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMNEINGLQIKGKQLMEENERLKRHV 171
                      6789999999999**************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.843161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002652.68E-39277No hitNo description
PRINTSPR004041.9E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-30382IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.9787177IPR002487Transcription factor, K-box
PfamPF014862.3E-1592171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALVVFSS TGKLFEYSNL  60
SMKEILERHH LHSKNLAKLE QPSLELQLVE NSNCSRLNKE VAEQSRLLRQ LRGEDLQGLN  120
IEELQQLERS LETGLGRVIE KKGEKIMNEI NGLQIKGKQL MEENERLKRH VAGMISTGLM  180
HGDTESELLV MEEGHSSESV TNVCNSTTGP PLEDDSSDTS LKLGLPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19169169MEF2C
5f28_B1e-19169169MEF2C
5f28_C1e-19169169MEF2C
5f28_D1e-19169169MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.32720.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1450690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367260.0BT136726.1 Lotus japonicus clone JCVI-FLLj-4I6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360642.11e-131MADS-box protein SVP
SwissprotQ9FUY61e-109JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLI3S8C91e-160I3S8C9_LOTJA; Uncharacterized protein
STRINGGLYMA02G04710.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]