PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1451710.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 213aa    MW: 24258.3 Da    PI: 10.9389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1451710.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-1054100354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++h+e+E+rRR riN  +++Lr  lP+        K +Ka++L ++++ +k+L
  Lj2g3v1451710.1  54 KKHSEAEKRRRTRINGQYDTLRNTLPNiI------KKDKATVLSETIKQVKEL 100
                      68*************************55......9999****9999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.13851100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-754100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-754105No hitNo description
Gene3DG3DSA:4.10.280.109.0E-1355108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1255109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-957106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.0E-8137200No hitNo description
CDDcd048732.41E-7140184No hitNo description
SuperFamilySSF550214.08E-8140203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVSFQQGMQH FRNYYNSEAS MIGSSFPRTF LSQTYKNSFS KPRSTEEIKL LAAKKHSEAE  60
KRRRTRINGQ YDTLRNTLPN IIKKDKATVL SETIKQVKEL RKKVSKLEVD GPKEVKFPSG  120
ADRLNLEKCN EDKGMIVKAT LSCEDRPELM SAIARALRSM KANVIKAEML TVGGRTRTVL  180
WVQGIGTEGL GKLKSTLKVV MHKPSFKMRR FTQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1451710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027362838.11e-119transcription factor bHLH131
TrEMBLA0A1S2XKR41e-110A0A1S2XKR4_CICAR; transcription factor bHLH131
STRINGXP_004489760.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-41bHLH family protein