PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1467850.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21958.2 Da    PI: 10.0705
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1467850.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.8e-281059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyeyss
  Lj2g3v1467850.1 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYSS 59
                     9***********************************************96 PP
2K-box81.22.4e-2780169998
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + e++a+ +q+e++ Lk++++nLq+++R+llGe+L  Ls+++Lq Le+qLe sl+ +R kK++ l+++i+el +k + ++++n++L kk+
  Lj2g3v1467850.1  80 NPESEAKFWQREAEGLKQQVQNLQENHRQLLGEQLYGLSVRNLQDLENQLEMSLQGVRMKKENTLTDEIQELNRKGNLIHQDNMELYKKV 169
                      578999*********************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
CDDcd002652.07E-43277No hitNo description
SuperFamilySSF554556.02E-33287IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2582169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.23385175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRGKIVIQR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYSST  60
SMKSVIERYK TCKGEHQLIN PESEAKFWQR EAEGLKQQVQ NLQENHRQLL GEQLYGLSVR  120
NLQDLENQLE MSLQGVRMKK ENTLTDEIQE LNRKGNLIHQ DNMELYKKVN LIQQENKQLR  180
KKVYGTTET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21177177MEF2C
5f28_B4e-21177177MEF2C
5f28_C4e-21177177MEF2C
5f28_D4e-21177177MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1467850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1482330.0BT148233.1 Lotus japonicus clone JCVI-FLLj-16L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019420953.11e-115PREDICTED: MADS-box transcription factor 23-like isoform X1
RefseqXP_019420954.11e-115PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP493e-96MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA9YWS11e-111A9YWS1_MEDTR; MADS-box protein
STRINGAES959161e-112(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.17e-92AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]