PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1643300.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 325aa MW: 37703.1 Da PI: 6.0724

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1643300.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.5	4e-26	198	247	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +dl kyF++pi +A++ L+v+lTvLK++CR++GI+RWPhRkiksl Lj2g3v1643300.1 198 ANIAYSDLVKYFDMPIVEASRRLNVGLTVLKKKCREFGIPRWPHRKIKSL 247 799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.167	182	267	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-21	199	247	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDSSFLTNLL LFNNIIQPEL MRSVHVYRQC GDDGEEETEV EREFLFSKYS YYVEMQASPI 60 LQLQKSCVSG IREGYRNGVW DCIFAFHAGH SPQFSRIPPL LLVTRNPKLH CIPNLLNDLH 120 IIYKLDVKEE DIDVTQEESL GNNNDCLPSE IALPKRDLDL NCLPYEEDES ELQDNEIEVE 180 SLTGLVGKKK RAPSNHIANI AYSDLVKYFD MPIVEASRRL NVGLTVLKKK CREFGIPRWP 240 HRKIKSLDSL IHDLQEMAKH QELEDKAAAM AVMKRQKMLE SEKENIEKQP FIEIQSETKK 300 FRQDIFKRRY RARAIEKQNS TVSSS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.9604	0.0	pod

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1643300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027362027.1	1e-173	protein RKD5 isoform X1
Swissprot	O81791	9e-93	RKD5_ARATH; Protein RKD5
TrEMBL	A0A371I7W5	1e-166	A0A371I7W5_MUCPR; Protein RKD5 (Fragment)
STRING	GLYMA01G36360.1	1e-165	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-87	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]