PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1695250.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 124aa    MW: 14727.9 Da    PI: 9.6991
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1695250.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.11.4e-135484891
             FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                     +ek  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p
  Lj2g3v1695250.2  5 REKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48
                     367889***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-11648IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007062Biological Processsister chromatid cohesion
GO:0005694Cellular Componentchromosome
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MPDKREKIVR QRAETRVGCR AMILVRKVSS GKWVVTKFVK EHTHPLSPGK GRRDCVYEQY  60
PNEHDKIREL SQQLAIEKKR SATYKRHLEL IFDYIDEHNE SLSKKIQHIV DCVKDMETKE  120
EQSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1695250.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341377.12e-81protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBLA0A371H9415e-80A0A371H941_MUCPR; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRINGXP_010097543.11e-78(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-64FAR1 family protein