PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1745000.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 242aa    MW: 25982.7 Da    PI: 8.201
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1745000.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.23.4e-32116170460
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      vrY+eCl+NhAas+G+h+vDGCgEfmps gee  ++alkCaAC+CHRnFHR+eve e
  Lj2g3v1745000.1 116 VRYRECLRNHAASMGSHVVDGCGEFMPS-GEE-GTEALKCAACECHRNFHRKEVEGE 170
                      89*************************9.666.4789****************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-19116170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-29116167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-28117167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.012118166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSTATTTTLG YNLPIRNSSS SSSKLSSPTA GHRTSTDQPA PVPVPHTNNN TLIFNDSAQP  60
SHHHHHLSAP PLPQTQNPHH QSQSPTTTDP DLTPSSSPLA TTRITAPPPP PPTPLVRYRE  120
CLRNHAASMG SHVVDGCGEF MPSGEEGTEA LKCAACECHR NFHRKEVEGE QQVPNPSFHS  180
YYKHSNGHLQ LPAPQPLPPP QNSSLRFSHA AAGTTPTAGG GADGFRRRCR GVVERRSEHV  240
PA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.223370.0protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1745000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0073010.0AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019421333.12e-48PREDICTED: zinc-finger homeodomain protein 6-like
RefseqXP_019421336.12e-48PREDICTED: zinc-finger homeodomain protein 6-like
RefseqXP_019421337.12e-48PREDICTED: zinc-finger homeodomain protein 6-like
RefseqXP_019421338.12e-48PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBLA0A4P1QTJ04e-47A0A4P1QTJ0_LUPAN; Uncharacterized protein
STRINGGLYMA11G07360.12e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.18e-27homeobox protein 33