PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1779750.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 502aa    MW: 52439.7 Da    PI: 8.3727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1779750.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056688123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Lj2g3v1779750.1 66 FVCEICNKGFQRDQNLQLHRRGH 88
                     89*******************88 PP
2zf-C2H211.20.0011142164123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H + +
  Lj2g3v1779750.1 142 WKCDKCSKKYAVQSDWKAHSKIC 164
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-76588No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.0E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496688IPR007087Zinc finger, C2H2
SMARTSM003550.0176688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355190107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.4E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MPVDLDNVST ASGEASVSSS GNQIVPPPKA ATTTTAKKKR NLPGMPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP EPTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESARS HPQSAAKGSP ESESKAATGD SAPSVPAAVA SQSNSVVLST  240
LQTQNTELPE NSPQIIEEPP ANTAINGSCS TSTSTSSTSN NNSNGGASSS VFASLFASST  300
PSQNLQSQTP AFSDLIRAMG PPADLSGPSS AESISLCLGS SIFATGGQER RQYAPPPQPA  360
MSATALLQKA AQMGAAATNA SLLRGLGIVS SSASSSPGQQ DSLQWGQRPV EPENSTVPSG  420
LGLSLPYDGD SGLKELMMGT PSMFVPKQTT LDFLGLGMAV GGTPGGGLSA LMTSIGGGLD  480
VTSAAASFGN GEFSGKDIGG NT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36138199364Zinc finger protein JACKDAW
5b3h_F9e-36138199364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.206160.0cell culture| pod
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1779750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-148AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217259.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X1
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A151TI680.0A0A151TI68_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA01G38290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-144indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]