PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1779790.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 300aa    MW: 33450 Da    PI: 7.0221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1779790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS221.73.8e-68929979374
             GRAS  79 aalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLa 166
                        +k+fs +sPi+ fs +t+Nqa+le++ ++    +HiiDf+i+ G+Q+++L++++a++      g+p lRiT+v+++e   + e   ++e+L 
  Lj2g3v1779790.1   9 RTFKAFSGISPIPMFSIFTTNQALLESLIHSssCFLHIIDFEIGLGIQYASLMKEIAEKVetgkIGSPVLRITAVVPEE--YAVESTLVRENLV 100
                      56788*********************9988744566**********************99766667***********66..8999999****** PP

             GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerf 257
                      +fA+el+++++ +++  +++e++++++ ++  gE +aV l+ +++r l   +s +     ++  v+s+sP vvv+v++e  a+   ++sF +++
  Lj2g3v1779790.1 101 QFAQELRIRVQVEFVSLRTFETVSFKAVKFVDGERTAVLLSPAIFRRL---GSAAA----FMADVRSVSPCVVVFVDEEgwAEAaAEASFRRGV 187
                      **************9999*****************************9...55555....*******************776666888****** PP

             GRAS 258 lealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                      +++le+ys++++sl+a++ +    e+ + +E  ll+++ + +v  +g++       +  Wre++  aG++pv+ls++a  qa++ll+k + +g+
  Lj2g3v1779790.1 188 VSSLEFYSMMLESLDASVVSGGggEWVKRIEMLLLRPKMMAAVDSAGRR-------MPPWREAFYCAGMRPVQLSQFADFQAECLLAKSQIRGF 274
                      **************99987777779999*******************98.......99************************************ PP

             GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                      +v +++++lvl W++r++v++SaWr
  Lj2g3v1779790.1 275 HVAKRQAELVLFWHERAMVATSAWR 299
                      ************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.0231279IPR005202Transcription factor GRAS
PfamPF035141.3E-659299IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVEIVHGMRT FKAFSGISPI PMFSIFTTNQ ALLESLIHSS SCFLHIIDFE IGLGIQYASL  60
MKEIAEKVET GKIGSPVLRI TAVVPEEYAV ESTLVRENLV QFAQELRIRV QVEFVSLRTF  120
ETVSFKAVKF VDGERTAVLL SPAIFRRLGS AAAFMADVRS VSPCVVVFVD EEGWAEAAAE  180
ASFRRGVVSS LEFYSMMLES LDASVVSGGG GEWVKRIEML LLRPKMMAAV DSAGRRMPPW  240
REAFYCAGMR PVQLSQFADF QAECLLAKSQ IRGFHVAKRQ AELVLFWHER AMVATSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-171129899378Protein SCARECROW
5b3h_A4e-171129898377Protein SCARECROW
5b3h_D4e-171129898377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1779790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629479.11e-171scarecrow-like protein 15
SwissprotO232101e-118SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2K3LDT61e-170A0A2K3LDT6_TRIPR; SCARECROW-like protein 15-like
TrEMBLA0A444WS741e-170A0A444WS74_ARAHY; Uncharacterized protein
TrEMBLG7LEV21e-170G7LEV2_MEDTR; GRAS family transcription factor
STRINGAET039551e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-107GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]