PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1890900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 174aa    MW: 19649.8 Da    PI: 7.9546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1890900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-09347345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e ++ + +a++ +  +   +W++Ia+ ++ g+  k++k++++
  Lj2g3v1890900.1  3 EWSREQEKAFENAIASYAEDdpyRWEKIAAAVP-GKAIKEVKHHYL 47
                     5********************************.**********96 PP
2Myb_DNA-binding48.12.6e-1590134347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+++++ + +++G+g+W++I+r++  +Rt+ q+ s+ qky
  Lj2g3v1890900.1  90 PWTEDEHKQFLLGLEKFGKGDWRSISRHFVVTRTATQVASHAQKY 134
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.8E-4152IPR001005SANT/Myb domain
PROSITE profilePS512949.106154IPR017930Myb domain
SuperFamilySSF466895.6E-11358IPR009057Homeodomain-like
PfamPF002492.6E-7347IPR001005SANT/Myb domain
CDDcd001679.97E-7350No hitNo description
Gene3DG3DSA:1.10.10.607.9E-5351IPR009057Homeodomain-like
PROSITE profilePS5129417.09783139IPR017930Myb domain
SuperFamilySSF466892.66E-1785140IPR009057Homeodomain-like
SMARTSM007174.0E-1287137IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-1787137IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-1287133IPR009057Homeodomain-like
PfamPF002493.3E-1390134IPR001005SANT/Myb domain
CDDcd001672.05E-1090135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAEWSREQEK AFENAIASYA EDDPYRWEKI AAAVPGKAIK EVKHHYLILL DDVLNIESGL  60
VPPPDYDSFS QGSKSHASRS DNQERRKGTP WTEDEHKQFL LGLEKFGKGD WRSISRHFVV  120
TRTATQVASH AQKYFLRLNS TSNKKRSSIH DITIDNNEGT SAAPQGPITG QKNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-164861193RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1890900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360796.19e-77transcription factor SRM1-like isoform X2
SwissprotQ9FNN62e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLI1ND503e-74I1ND50_SOYBN; Uncharacterized protein
TrEMBLV7C7503e-74V7C750_PHAVU; Uncharacterized protein
STRINGGLYMA20G01450.15e-75(Glycine max)
STRINGXP_007153178.15e-75(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.18e-67MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]