PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1915610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 173aa    MW: 19153.6 Da    PI: 10.4766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1915610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.73.6e-201863147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Lj2g3v1915610.1 18 KGPWSPEEDEALQRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 63
                     79******************************.***********985 PP
2Myb_DNA-binding54.33.1e-1772114347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Lj2g3v1915610.1  72 AFTAEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 114
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.0521368IPR017930Myb domain
SuperFamilySSF466895.53E-3315111IPR009057Homeodomain-like
SMARTSM007175.4E-181766IPR001005SANT/Myb domain
PfamPF002497.4E-201863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-271971IPR009057Homeodomain-like
CDDcd001674.16E-172062No hitNo description
SMARTSM007175.1E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129420.30270119IPR017930Myb domain
CDDcd001672.04E-1172115No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2372118IPR009057Homeodomain-like
PfamPF002491.4E-1472114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MNTNTNTNTS ITKMDRIKGP WSPEEDEALQ RLVEKHGPRN WSLISKSIPG RSGKSCRLRW  60
CNQLSPQVEH RAFTAEEDDT IIRAHARFGN KWATIARLLS GRTDNAIKNH WNSTLKRKCA  120
SFMMDDHNAP PLKRSVSAGA ATPVSTGLYM NPPSPGSPSR SDVSQSSVPV CTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-42171193105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-411711957159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-411711957159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-42171193105C-Myb DNA-Binding Domain
1msf_C4e-42171193105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.2840.0cell culture| floral bud| flower| pod| protoplast| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1915610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156759.11e-104hypothetical protein PHAVU_002G015100g
SwissprotO231603e-79MYB73_ARATH; Transcription factor MYB73
TrEMBLV7CHD21e-103V7CHD2_PHAVU; Uncharacterized protein
STRINGXP_007156759.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-75myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]