PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v1965110.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 237aa MW: 25847.3 Da PI: 8.0955

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v1965110.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.5	2.9e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++++p+ +r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q Lj2g3v1965110.1 2 SCNGCRVLRKGCSESCILRPCLqwidtAEAQGHATVFVAKFFGRADLMSFISNVPQPQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6*******************9999777889********************************************************** PP DUF260 90 lkaelall 97 +++e++l+ Lj2g3v1965110.1 96 AAVETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.656	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTAE AQGHATVFVA KFFGRADLMS FISNVPQPQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLKPL PELLGLDAPS 120 HVPTAADDAS EGEVTYDTWR IRDPNPNARL TNSRSSAGKR QRPEELAKLQ TTTDLNLRLT 180 PGFLQNVSSY GCKREARRPG SPSMNSEESV TTTACLGSGI GDHCSRDEDR KVLKLFV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v1965110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006432	2e-52	AP006432.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT14C18, TM0330, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027361406.1	1e-144	LOB domain-containing protein 38-like
Swissprot	Q9SZE8	2e-79	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A445M5C5	1e-136	A0A445M5C5_GLYSO; LOB domain-containing protein 38
TrEMBL	I1J9D3	1e-136	I1J9D3_SOYBN; Uncharacterized protein
STRING	GLYMA01G40010.1	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	7e-82	LOB domain-containing protein 39