PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1989210.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 295aa    MW: 33229.5 Da    PI: 6.8034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1989210.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-20137187255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka+++a+  ++g
  Lj2g3v1989210.1 137 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFTFRG 187
                      8********.**********96655..**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-32136196IPR001471AP2/ERF domain
CDDcd000185.49E-32136195No hitNo description
SMARTSM003801.4E-37137201IPR001471AP2/ERF domain
PfamPF008477.6E-14137187IPR001471AP2/ERF domain
PROSITE profilePS5103224.144137195IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22137196IPR016177DNA-binding domain
PRINTSPR003671.8E-10138149IPR001471AP2/ERF domain
PRINTSPR003671.8E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MANPDEVCAL YRIKLHLLGE LSPIPIRTTH THTHTHDDDF AFQFDLPNPN SSQSQSQSQS  60
FTSDPIFEFD CKPIIFDIET ESPKPIPVHK KQPALSRRKS LEISLPKKTT EWIQFGEVAP  120
EPSEASAKPE VEVEKKHYRG VRQRPWGKFA AEIRDPNKRG SRVWLGTFDT AIEAAKAYDR  180
AAFTFRGSKA VLNFPLEAGV VDRKHSREEE AEEAVKRQKT VESEIINRIR DTLLTPPSSS  240
GDVKGLFTVE SDINRIKETS LTPSSWTGFW DNFTVAPLSP LSPHPALGFP QLMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-29136196464ATERF1
3gcc_A1e-29136196464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.29907e-97cell culture| pod| protoplast| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1989210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312532e-53KT031253.1 Glycine max clone HN_CCL_99 AP2-EREBP transcription factor (Glyma05g05130.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304366.23e-78ethylene-responsive transcription factor 5-like protein
RefseqXP_014507066.14e-78ethylene-responsive transcription factor 5
RefseqXP_028186914.13e-78ethylene-responsive transcription factor 5-like
TrEMBLA0A1S3ULY11e-76A0A1S3ULY1_VIGRR; ethylene-responsive transcription factor 5
TrEMBLA0A445HWI87e-77A0A445HWI8_GLYSO; Ethylene-responsive transcription factor 5
TrEMBLC6TEG47e-77C6TEG4_SOYBN; Uncharacterized protein
TrEMBLI1LGT27e-77I1LGT2_SOYBN; Uncharacterized protein
STRINGGLYMA11G03900.11e-77(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-48ethylene responsive element binding factor 5