PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2087840.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 331aa    MW: 37438.3 Da    PI: 4.7129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2087840.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-19101151155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  +++a+ k++g
  Lj2g3v2087840.1 101 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFNTAEEAAMVYDHAAIKIRG 151
                      59********.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-33101158No hitNo description
Gene3DG3DSA:3.30.730.109.4E-30102158IPR001471AP2/ERF domain
SMARTSM003804.4E-36102167IPR001471AP2/ERF domain
PROSITE profilePS5103223.037102159IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-21102158IPR016177DNA-binding domain
PfamPF008471.1E-11102151IPR001471AP2/ERF domain
PRINTSPR003673.4E-10103114IPR001471AP2/ERF domain
PRINTSPR003673.4E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTEKKYTHRL YQTDSPKQPF PRVVRISVAD TDATDSSSDE EEQTIPCSTR RHRQRRVVNE  60
IIIEPCAAQN DGDGVVSRKR SRATKARAPA SRRVSSSSDG KKFRGVRQRP WGKWAAEIRD  120
PARRVRLWLG TFNTAEEAAM VYDHAAIKIR GPEALTNFLK PPTTWPENEE KPMSSSGYSS  180
GQEESHHSKS NLFSPISVLQ CSSLSEEGES VTVKEEENSS FSENLSTEKI ALPTTEKMEE  240
SESLFPIPND VMQFDVQFQD VLYGNNSFND VLPERSMFFE DDGGCCSSST NLFEDLEFGF  300
NSWNNTTTMN SNRDFFQDID DLFVSDPLLV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2298158162ATERF1
3gcc_A6e-2298158162ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.47570.0floral bud| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2087840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049020.0AP004902.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT04G24, TM0060, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538682.14e-97ethylene-responsive transcription factor CRF1
RefseqXP_028188618.14e-97ethylene-responsive transcription factor CRF1-like
TrEMBLA0A0U1T7L00.0A0A0U1T7L0_LOTCO; AP2/ERF
STRINGGLYMA11G02140.12e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-36cytokinin response factor 4