PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2088080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 329aa    MW: 37194.4 Da    PI: 6.5827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2088080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.3e-29127187259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK++ gs++prsYYrCt++   gC+++k+v+rs+edp++++i Y+g+H+++
  Lj2g3v2088080.1 127 EDGYNWRKYGQKDILGSKHPRSYYRCTFRkskGCWATKQVQRSDEDPTILDISYHGKHTCS 187
                      7**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28120188IPR003657WRKY domain
PROSITE profilePS5081122.791121184IPR003657WRKY domain
SuperFamilySSF1182904.58E-25126188IPR003657WRKY domain
SMARTSM007747.0E-39126188IPR003657WRKY domain
PfamPF031063.5E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MESDMNWEQK ALINELIQGM EMARKLKSDL SLTSSLDTKN LLLQQILSSY DKALLILRCN  60
ASNSKSQTMH QATQTLSPES SLFVKRGEDI EGDVKGHHEP KQNSKKRKML MDKVRVKTEN  120
GSEGSQEDGY NWRKYGQKDI LGSKHPRSYY RCTFRKSKGC WATKQVQRSD EDPTILDISY  180
HGKHTCSQGN NAVLPPNSQD LQEKPHGYNN DDVPQSQPSQ ESIAKFRNNL TVNTYNLGNE  240
EMACPFTSSS ASFGCMTQDN HNLLPHVSYD PFLSSFTHMH LLSPDSDDIT RIISASTSTT  300
NSPIFDLDFT LDEVKINSNF PFNASEFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-171281841874Disease resistance protein RRS1
5w3x_D2e-171281841874Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107PKQNSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2088080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525349.11e-139probable WRKY transcription factor 41
RefseqXP_028233666.11e-139probable WRKY transcription factor 41
TrEMBLA0A445KRT91e-137A0A445KRT9_GLYSO; Putative WRKY transcription factor 41 isoform A
TrEMBLI1K6A31e-137I1K6A3_SOYBN; Uncharacterized protein
STRINGGLYMA05G36970.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-51WRKY family protein