PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2114130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 205aa    MW: 22504.3 Da    PI: 4.5404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2114130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-172473356
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     y+GVr +k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a+  l+g+
  Lj2g3v2114130.1 24 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYEQPEMAAAAYDVAAFHLKGH 73
                     9****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.3522380IPR001471AP2/ERF domain
SMARTSM003803.5E-342386IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-212381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-312381IPR001471AP2/ERF domain
PfamPF008473.8E-112473IPR001471AP2/ERF domain
PRINTSPR003673.4E-122435IPR001471AP2/ERF domain
CDDcd000183.46E-192482No hitNo description
PRINTSPR003673.4E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEEETNSTVQ EQSVIAAATA TKAYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYEQPEMAA  60
AAYDVAAFHL KGHAARLNFP ELAETMPRPA SSKAEDVVLA AQQAALMLKR SSPPPPMPEG  120
GSGGGGAPDP AAVRVGLSPA QIQAINECPM DSPNMWMQMA ADTLMFDDES MKTVYSNCNG  180
DDEVMELSGW EETQFEYKSL WDSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-162280463ATERF1
3gcc_A2e-162280463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2114130.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230149.15e-67ethylene-responsive transcription factor ERF022
TrEMBLA0A151SD081e-65A0A151SD08_CAJCA; Ethylene-responsive transcription factor ERF021 family
STRINGAES938815e-63(Medicago truncatula)
STRINGXP_007157008.11e-62(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-46ERF family protein