PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2151670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 241aa    MW: 27368.2 Da    PI: 4.7509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2151670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.8e-1278121654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Lj2g3v2151670.1  78 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILGDTIDYMKEL 121
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1872121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1575133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-978121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1679133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-479125No hitNo description
CDDcd048731.00E-5167208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDSSSYNTLL ETPLNTQPFL AQEDYPLSVM EDEDLDLETT CKMEPNQSPE AIPVFNTGTC  60
LERKNRAKKL EGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTAI LGDTIDYMKE  120
LLEKINNLKQ EVEVDSDMTN IFKDAKPNEI LVRNSPKFDV DRRNINTRVE ICCAGKPGLL  180
LSTVNTLEAL GLDIQQCVIS SFNDFTMQAS CSEEFEQKTI LSSEDIKQAL FRNAGYGGQC  240
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18087ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.178760.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2151670.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1387450.0BT138745.1 Lotus japonicus clone JCVI-FLLj-19J17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544841.11e-140transcription factor bHLH61
RefseqXP_028199138.11e-140transcription factor bHLH61-like
SwissprotQ9LSL12e-82BH093_ARATH; Transcription factor bHLH93
TrEMBLI3SE481e-174I3SE48_LOTJA; Uncharacterized protein
STRINGGLYMA14G36370.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-84beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]