PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2221850.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family CO-like
Protein Properties Length: 428aa    MW: 46725 Da    PI: 4.7867
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2221850.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.11.2e-05542637
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++e++ + +C+++  +lC +C  + H+       H
  Lj2g3v2221850.1  5 CDFCGEQRSSVYCRSDVACLCLSCDRNVHSAnalskrH 42
                     ***************************99545555555 PP
2zf-B_box24.17.3e-084789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                     +C++++++++   C d ++ lC++C   +H g       H++++
  Lj2g3v2221850.1 47 VCERCNSQPAYVRCADEKVSLCQNCDWLSH-GaapssstHKRQS 89
                     8*************************999*.5588888998876 PP
3CCT61.33.1e-21371414144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a++RYkeK+k+RkF+K++rY++RKa+A+ R+RvKGrFvk+ 
  Lj2g3v2221850.1 371 RSNAVMRYKEKKKNRKFDKRVRYATRKARADVRKRVKGRFVKAG 414
                      899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3147IPR000315B-box-type zinc finger
CDDcd000211.84E-7447No hitNo description
SMARTSM003364.2E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1584390IPR000315B-box-type zinc finger
PfamPF006433.7E-54690IPR000315B-box-type zinc finger
CDDcd000215.61E-44790No hitNo description
SMARTSM003360.154890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.398371413IPR010402CCT domain
PfamPF062032.8E-16371413IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGYLCDFCGE QRSSVYCRSD VACLCLSCDR NVHSANALSK RHARTLVCER CNSQPAYVRC  60
ADEKVSLCQN CDWLSHGAAP SSSTHKRQSI NCYSGCPSAA ELSSMWSFFS DIPSIGEACE  120
KELGLMSINE NTDKSAWVPP ESENVSGAAQ VTDLPNKDKS WAGTSSAPES SSEPRVLEQA  180
PGPANECMPK LHCPAKKTSE LCEDDTVCDD FNIDEMDLFL KDEMDLFSKD EMDLELENYE  240
ELFGMALCHS EELFENGGIG SLFEAKDISA SAGDSNCQGA LTAEGSSVAL GNATKPACST  300
APSADSMLST KTEPIISFAA RQSQSNISFS GAAKDSSTAD YQDCGASSML PMGEPPWCPP  360
FPESSLHSAN RSNAVMRYKE KKKNRKFDKR VRYATRKARA DVRKRVKGRF VKAGDVYDYD  420
PLSETRSY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.155840.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2221850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027940006.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_027940007.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_027940008.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_027940009.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_027940010.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-139COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A4D6MM650.0A0A4D6MM65_VIGUN; Zinc finger protein CONSTANS
STRINGGLYMA02G38870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-115B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]