PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2447140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 193aa    MW: 21137.5 Da    PI: 11.385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2447140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.56.7e-13128160238
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                      +++GVr+++ +grW+AeIrdps+   r+r +lg f+t
  Lj2g3v2447140.1 128 KFRGVRQRP-WGRWAAEIRDPSQ---RRRLWLGAFDT 160
                      89*******.**********965...5*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-7128160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-16128161IPR001471AP2/ERF domain
SMARTSM003801.2E-9128176IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-10128161IPR016177DNA-binding domain
PROSITE profilePS5103215.158128161IPR001471AP2/ERF domain
CDDcd000181.54E-16128161No hitNo description
PRINTSPR003673.0E-6129140IPR001471AP2/ERF domain
PRINTSPR003673.0E-6151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSVQSTLKTK KLIKLATPSS VFEDDPPCKR RRKTQKKLVR IIVTDHDATD DSDSSSDGER  60
ANTTATKRET TTFTVKINFP FTNTLSSSSL SPSSSSSLSS SSEQSLKKLK RVKKPTTPPS  120
AATRRSHKFR GVRQRPWGRW AAEIRDPSQR RRLWLGAFDT AGGGPQRRHQ LSEYSQGGAE  180
NADGGANSAS SGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.83626e-47flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2447140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332331.14e-54pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1J7HLM34e-39A0A1J7HLM3_LUPAN; Uncharacterized protein
STRINGGLYMA02G40320.11e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-17cytokinin response factor 4