PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v2827780.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

LBD

Protein Properties

Length: 167aa MW: 18604 Da PI: 4.8734

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v2827780.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134	6e-42	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+Ca+dC+++pyfp+++p+kfa+vhk+FGasn + +l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +l Lj2g3v2827780.1 8 PCASCKLLRRRCAQDCIFSPYFPSDDPQKFAIVHKVFGASNNSTMLQELPFDQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQL 101 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Lj2g3v2827780.1 102 AVAQAE 107 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.926	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-41	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MGGSGNSPCA SCKLLRRRCA QDCIFSPYFP SDDPQKFAIV HKVFGASNNS TMLQELPFDQ 60 RADAVSSLVY EAHARVRDPV YGCVGAISYL QNQVSELQMQ LAVAQAEILC IQMQNEPVMP 120 NPELDLDQKS YLLQNDLPQY LNYTSSSNVI HHDSLSRESI FGHDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	3	109	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	3	109	7	112	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v2827780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028195629.1	1e-101	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0B2PB86	1e-100	A0A0B2PB86_GLYSO; LOB domain-containing protein 12
STRING	GLYMA18G02780.1	2e-99	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-77	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]