PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2843700.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 174aa    MW: 18926.6 Da    PI: 8.6393
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2843700.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.91.6e-38141121100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l   pe++r da++slvyeA+ r+rdPvyG++g i++lqqq+++l ael
  Lj2g3v2843700.1  14 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMV-PESQRADAANSLVYEANERLRDPVYGSMGAISSLQQQVQSLIAEL 106
                      7********************************************986.********************************************* PP

           DUF260  95 allkee 100
                      +++++e
  Lj2g3v2843700.1 107 NAVRSE 112
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74413113IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-3814110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MFGPQAGTLN TTSPCAACKL LRRRCAQECP FSPYFSPHEP HKFASVHKVF GASNVSKMLM  60
VPESQRADAA NSLVYEANER LRDPVYGSMG AISSLQQQVQ SLIAELNAVR SEILRHKLRE  120
VNMIHSSHVL VPSSEVISIA AQPPPTLPMP PLPTASSSIY TQQSTSSNYS TISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4281245122LOB family transfactor Ramosa2.1
5ly0_B4e-4281245122LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2843700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0068650.0AP006865.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT37H21, TM1032, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616758.14e-82LOB domain-containing protein 15
SwissprotQ9AT614e-64LBD13_ARATH; LOB domain-containing protein 13
TrEMBLG7KH288e-81G7KH28_MEDTR; LOB domain protein
STRINGAES997161e-81(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-63LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]