PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2877220.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 138aa    MW: 15363.1 Da    PI: 8.4716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2877220.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.2e-115075126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C +++rtG C yG++C+++H+
  Lj2g3v2877220.1 50 PGEPDCLYYLRTGMCGYGSNCRYNHP 75
                     5789*********************9 PP
2zf-CCCH33.66.7e-1199118827
                      GGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                      +f++tGtCkyG++Ck++H++
  Lj2g3v2877220.1  99 YFLKTGTCKYGSTCKYHHPK 118
                      8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1644977IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-54976IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-85175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-65476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-45575IPR000571Zinc finger, CCCH-type
SMARTSM003560.07191118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.54491119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-599120IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-899118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-599118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MPENRHVSRN AAASNPPADN NIEEAIRRLK INGNRDRDAV AQSTPYPDRP GEPDCLYYLR  60
TGMCGYGSNC RYNHPTHISL ATQLGEELPE RAGQPEGEYF LKTGTCKYGS TCKYHHPKDR  120
RGAAPVSFNT LGLPMRQG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.253550.0root
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2877220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332023.12e-77zinc finger CCCH domain-containing protein 3 isoform X2
SwissprotQ94AD91e-49C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1S2XLE02e-75A0A1S2XLE0_CICAR; zinc finger CCCH domain-containing protein 3
STRINGXP_004491091.14e-76(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-50C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]