PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v3044220.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SRS

Protein Properties

Length: 348aa MW: 36817.6 Da PI: 8.5879

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3044220.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.9	2.2e-67	123	286	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++a ++ a a + +++ +k++r s++++++s+t++s++ Lj2g3v3044220.1 123 GGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAPGAAAAVAGSsgSTSGTKKPRLVGSQTNTTASHTSTSNT 216 5889********************************************99888766655544445889999999************** PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++++etss +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle+ Lj2g3v3044220.1 217 TPPRSFETSSshqdasfketMPGQVRAPAVFKCVRVTAVEDGKDEYAYQAVVKIGGHVFKGFLYDQGLEN 286 ****999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.4E-61	125	285	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.1E-27	127	169	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.4E-29	237	284	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MGMFVVAPAS SFHHHHHLQQ HHHHIHDNNN SNNPIISDPH SLNPATALGV GVIPLLTAID 60 NDNATTNMLS RRNQGIQFWQ EQQTHHHHQG HYMKNKQGNL LEHNVSSGNL VHLGGGGDAT 120 TTGGTTTCQD CGNQAKKDCT NRRCRTCCKS RGFDCPTHVK STWVPAARRR ERQLMTAPGA 180 AAAVAGSSGS TSGTKKPRLV GSQTNTTASH TSTSNTTPPR SFETSSSHQD ASFKETMPGQ 240 VRAPAVFKCV RVTAVEDGKD EYAYQAVVKI GGHVFKGFLY DQGLENRDVY SNFSELHLGG 300 GSGGVGGTVG GGGRNGASSS SPMMDPSDVY AASGGGLLGG SSYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MGMFVVAPAS SFHHHHHLQQ HHHHIHDNNN SNNPIISDPH SLNPATALGV GVIPLLTAID  60
NDNATTNMLS RRNQGIQFWQ EQQTHHHHQG HYMKNKQGNL LEHNVSSGNL VHLGGGGDAT  120
TTGGTTTCQD CGNQAKKDCT NRRCRTCCKS RGFDCPTHVK STWVPAARRR ERQLMTAPGA  180
AAAVAGSSGS TSGTKKPRLV GSQTNTTASH TSTSNTTPPR SFETSSSHQD ASFKETMPGQ  240
VRAPAVFKCV RVTAVEDGKD EYAYQAVVKI GGHVFKGFLY DQGLENRDVY SNFSELHLGG  300
GSGGVGGTVG GGGRNGASSS SPMMDPSDVY AASGGGLLGG SSYGNPIN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3044220.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006575625.1	1e-138	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	2e-82	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	I1JIY0	1e-137	I1JIY0_SOYBN; Uncharacterized protein
STRING	GLYMA02G44860.2	1e-137	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-69	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]