PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3059650.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 429aa    MW: 48331.3 Da    PI: 6.9957
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3059650.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.91.6e-31103207199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  Lj2g3v3059650.1 103 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGlGDlY 196
                      89****************************66677899*************************************************7768889 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l++ ++r+
  Lj2g3v3059650.1 197 RHRLYIDWRRR 207
                      99999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4092206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-29100191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-26101190No hitNo description
PfamPF023626.1E-29103207IPR003340B3 DNA binding domain
PROSITE profilePS5086314.269103208IPR003340B3 DNA binding domain
SMARTSM010193.7E-23103208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MELMEEVKGH SDSREEGEEL EETATPEIIT ITDATYNSSS GLGLHQQQDA AAAVSNFTNR  60
RNQQLDLMDL TLGSHNHTEL EEHGSGSGSR ERDQVVVEKE HMFDKVVTPS DVGKLNRLVI  120
PKQHAEKYFP LDSSSNEKGL LLNFEDRNGK LWRFRYSYWN SSQSYVMTKG WSRFVKDKKL  180
DAGDIVSFQR GLGDLYRHRL YIDWRRRTHH PHHDPNSNSL ITPFFLPNHY SIRWGSSSSA  240
ASAAGARFYS LPSPIPPSST TTMPLPRLYN DHFHQQNYNM YNFHQQYHHG ELNSPGSGSV  300
YYLSSPPAVP SMRDQQEIRG SINVPMIIDS VPVSHHHHHH HHHQHGGNMS ASSAVAGGAN  360
STAGKRLRLF GVNMECASSS SSAADQEHVS STMPLLQRRE DPLSLSSSAR FGDQRGGMFD  420
LDPSLQYRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-64962071113B3 domain-containing transcription factor NGA1
5os9_B5e-64962071113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3059650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0067320.0AP006732.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT02K14, TM0918a, complete sequence.
GenBankAP0103400.0AP010340.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT62O06, TM1559b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019431727.11e-130PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_019431728.11e-130PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_019431729.11e-130PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_019431730.11e-130PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_019431731.11e-130PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_019431732.11e-130PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827992e-78NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A371E9I81e-132A0A371E9I8_MUCPR; B3 domain-containing transcription factor NGA1 (Fragment)
STRINGXP_007135337.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-72B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]