PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3084320.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 191aa    MW: 21967.1 Da    PI: 7.5542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3084320.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.33.4e-151964247
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdL 47
                      pGfrFhPtdeelv +yL++k+e+k++ + e ike  d+yk++Pw+ 
  Lj2g3v3084320.1 19 LPGFRFHPTDEELVGFYLRRKLEKKSHVF-ELIKESiDLYKYDPWNH 64
                     69************************777.7777766********84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-131663IPR003441NAC domain
PROSITE profilePS5100511.63818173IPR003441NAC domain
PfamPF023651.3E-82067IPR003441NAC domain
SMARTSM005121.2E-471179IPR001232S-phase kinase-associated protein 1-like
PfamPF039311.0E-1073133IPR016073SKP1 component, POZ domain
Gene3DG3DSA:3.30.710.104.3E-2073190No hitNo description
SuperFamilySSF546951.02E-873133IPR011333SKP1/BTB/POZ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDVAKLQDSD DKKEDEVVLP GFRFHPTDEE LVGFYLRRKL EKKSHVFELI KESIDLYKYD  60
PWNHLSSNFQ ENLISLKSSD NEVLKMNKRA ATSQSKVLRD VVDSTGGRDE IPVPGVTSLI  120
LSKITSFCKK KHKFDTQLNI ITELLKCTMD SYKACISSFV KDNQSIFSQL HDAANYLNIP  180
NLMELTSRTM R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.29550.0cell culture| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3084320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1433880.0BT143388.1 Lotus japonicus clone JCVI-FLLj-1E1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI3SSE01e-129I3SSE0_LOTJA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-20NAC domain containing protein 42