PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3084320.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 220aa    MW: 25157.8 Da    PI: 8.0121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3084320.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.43.1e-154894248
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp 48
                      pGfrFhPtdeelv +yL++k+e+k++ + e ike  d+yk++Pw+  
  Lj2g3v3084320.2 48 LPGFRFHPTDEELVGFYLRRKLEKKSHVF-ELIKESiDLYKYDPWNHL 94
                     69************************777.7777766********843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-134692IPR003441NAC domain
PROSITE profilePS5100511.63847202IPR003441NAC domain
PfamPF023651.9E-84996IPR003441NAC domain
SMARTSM005121.2E-4100208IPR001232S-phase kinase-associated protein 1-like
PfamPF039311.3E-10102162IPR016073SKP1 component, POZ domain
Gene3DG3DSA:3.30.710.106.3E-20102219No hitNo description
SuperFamilySSF546951.33E-8102162IPR011333SKP1/BTB/POZ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MADHSENSNP KHRIDCVVHA PLPYSSVVDK MGVAKLHDLD DKKEEVVLPG FRFHPTDEEL  60
VGFYLRRKLE KKSHVFELIK ESIDLYKYDP WNHLSSNFQE NLISLKSSDN EVLKMNKRAA  120
TSQSKVLRDV VDSTGGRDEI PVPGVTSLIL SKITSFCKKK HKFDTQLNII TELLKCTMDS  180
YKACISSFVK DNQSIFSQLH DAANYLNIPN LMELTSRTMR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.29550.0cell culture| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3084320.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1433880.0BT143388.1 Lotus japonicus clone JCVI-FLLj-1E1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI3SSE01e-142I3SSE0_LOTJA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-19NAC domain containing protein 42