PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3106090.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 170aa    MW: 19724.1 Da    PI: 6.7215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3106090.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17141061100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ t+  + ++g l++p++f++++gg+ +++    l+ ++g  W++++  +k++g +++++GWk+F+k   L+ g +v+F+++++s f   v
  Lj2g3v3106090.1  14 FFKIITT-TSIETGELRIPNNFTKRYGGDMANP--TFLKPPDGTDWKIYH--SKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDTSHF--GV 100
                      7787755.5556667***********9999887..89999**********..********************************998998..99 PP

                      EEE-SS CS
               B3  95 kvfrks 100
                      ++f+ks
  Lj2g3v3106090.1 101 HIFDKS 106
                      999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-219106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-2212106IPR015300DNA-binding pseudobarrel domain
CDDcd100179.60E-1613104No hitNo description
PROSITE profilePS5086313.16913106IPR003340B3 DNA binding domain
SMARTSM010193.5E-1014106IPR003340B3 DNA binding domain
PfamPF023625.2E-1614105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTRNMPNNHS PILFFKIITT TSIETGELRI PNNFTKRYGG DMANPTFLKP PDGTDWKIYH  60
SKTDGDVWFQ NGWKDFAKYY SLDHGHMVLF EYKDTSHFGV HIFDKSTLEI RYPSHENQDE  120
EHNPDQIDDD SVEILDKIPP CKKTKLKSPM SCPKPRKKLR TSTSEDVGES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159KPRKKLR
2154160PRKKLRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3106090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048960.0AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103090.0AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019459425.11e-66PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_019459426.17e-67PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_019459427.16e-67PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A371FM061e-56A0A371FM06_MUCPR; B3 domain-containing transcription factor VRN1 (Fragment)
STRINGXP_004498232.11e-55(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-23B3 family protein