PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3106100.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 76aa    MW: 8650.08 Da    PI: 10.1114
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3106100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.9e-16274385
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                     +v++p++v+  + l +p  fa+++ ++   ++++ l+ ++gr+W+v +  + ++    + +GWk+F + n+Lk+gD+++F+l+
  Lj2g3v3106100.1  2 TVMKPAYVNGYS-LHIPSFFAKKYLKN---ETDVLLQVLDGRTWSVSF--NLGK----FNAGWKKFTSVNNLKVGDVCLFELN 74
                     578889999888.***********655...347***************..7777....99*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.21E-13176No hitNo description
PROSITE profilePS5086312.252176IPR003340B3 DNA binding domain
SMARTSM010195.0E-5176IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-16275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15275IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-14274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MTVMKPAYVN GYSLHIPSFF AKKYLKNETD VLLQVLDGRT WSVSFNLGKF NAGWKKFTSV  60
NNLKVGDVCL FELNKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3106100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048961e-100AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103091e-100AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988168.12e-22B3 domain-containing transcription factor VRN1
TrEMBLA0A371FM063e-23A0A371FM06_MUCPR; B3 domain-containing transcription factor VRN1 (Fragment)
STRINGGLYMA09G20150.18e-20(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14300416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-11B3 family protein