PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v3245790.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 107aa    MW: 12568.5 Da    PI: 8.7198
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v3245790.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.33.7e-292104271373
             GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                      +ea++pre++ r + E+ l+gr++vnv+acegaer+er et+++W+ r ++aGFk++pl  +  + +k +++k + + + v+e+ +++++gWk+
  Lj2g3v3245790.1   2 FEATVPREDKYRLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRAGFKQLPLAPELSSRVKEMVKKEYHKDFVVDEDGKWVLQGWKG 95 
                      689************************************************************************888**************** PP

             GRAS 365 rpLvsvSaW 373
                      r L +vS+W
  Lj2g3v3245790.1  96 RILHAVSCW 104
                      ********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.832185IPR005202Transcription factor GRAS
PfamPF035141.3E-262104IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MFEATVPRED KYRLMFEEGL FGRDAVNVIA CEGAERVERP ETYKQWQVRN RRAGFKQLPL  60
APELSSRVKE MVKKEYHKDF VVDEDGKWVL QGWKGRILHA VSCWVPA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.162841e-177pod
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v3245790.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507177.12e-64scarecrow-like protein 30
RefseqXP_029127109.18e-65scarecrow-like protein 34
SwissprotP0C8847e-43SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A2K3MTJ46e-65A0A2K3MTJ4_TRIPR; SCARECROW-like protein 14-like
STRINGXP_004507177.18e-64(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14801813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.13e-45GRAS family protein