PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v3245800.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 179aa MW: 20903.4 Da PI: 9.6182

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3245800.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	183.4	1.6e-56	2	179	78	253
GRAS 78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 l+a+k++ +sP+ ++++++aN++Il+ v++ + vHiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rLak++ Lj2g3v3245800.1 2 LKAYKVYITASPFWRMTNFLANRTILKLVQNVSSVHIIDFGIFYGFQWPCLIQRLSERPGGPPKLRITGIDLPQPGfrPTERVEETGWRLAKYC 95 689**********************************************************************9************** PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 +++gvpfe+n+ +a+++e+++le+L+++ +E+++Vn+ ++l++l de+v+++ +rd+vLkl+++++P+++++ + +n++ F Lj2g3v3245800.1 96 KRFGVPFEYNF-LAQKWETIRLEDLKIDMeEEVTVVNCLYRLKNLSDETVTVNCPRDAVLKLIRRVNPNIFIHGVINGTYNAPFF 179 *******.6**********9989999************************************9999999988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.384	1	179	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.7E-54	2	179	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MLKAYKVYIT ASPFWRMTNF LANRTILKLV QNVSSVHIID FGIFYGFQWP CLIQRLSERP 60 GGPPKLRITG IDLPQPGFRP TERVEETGWR LAKYCKRFGV PFEYNFLAQK WETIRLEDLK 120 IDMEEEVTVV NCLYRLKNLS DETVTVNCPR DAVLKLIRRV NPNIFIHGVI NGTYNAPFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-23	1	146	95	248	Protein SCARECROW
5b3h_A	7e-23	1	146	94	247	Protein SCARECROW
5b3h_D	7e-23	1	146	94	247	Protein SCARECROW
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.16284	0.0	pod

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3245800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507177.1	1e-111	scarecrow-like protein 30
Swissprot	Q9XE58	5e-78	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S2YMW0	1e-110	A0A1S2YMW0_CICAR; scarecrow-like protein 30
STRING	XP_004507177.1	1e-111	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	2e-80	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]