PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj2g3v3291390.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YB

Protein Properties

Length: 164aa MW: 17363.1 Da PI: 5.5967

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3291390.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	107.1	1.1e-33	30	89	38	97
NF-YB 38 cvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplkvyl+++re+ege+ Lj2g3v3291390.1 30 FVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 89 69********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00615	4.6E-17	27	45	No hit	No description
Pfam	PF00808	1.2E-10	29	63	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.15E-23	29	105	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-29	30	98	IPR009072	Histone-fold
PRINTS	PR00615	4.6E-17	46	64	No hit	No description
PRINTS	PR00615	4.6E-17	65	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MADSDNESGG THNAGGNGGE LSSPREQDRF VSEFISFITG EASDKCQREK RKTINGDDLL 60 WAMTTLGFED YVEPLKVYLQ RFREIEGERT VAARDKDSVA ISSSGGGGYE YGAPMGMMMH 120 HQGHVYGSGG FHQVPVTGVS GGAPVMGKGG PGYPSPGSSA GRPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-25	31	84	40	93	NF-YB
4awl_B	1e-25	31	84	41	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-25	31	84	41	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.8412	6e-68	cell culture\| floral bud\| flower\| pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3291390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ379398	1e-40	FQ379398.1 Vitis vinifera clone SS0AEB10YI23.
GenBank	FQ389757	1e-40	FQ389757.1 Vitis vinifera clone SS0AEB19YM07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016166993.1	5e-73	nuclear transcription factor Y subunit B-3
Refseq	XP_025667034.1	5e-73	nuclear transcription factor Y subunit B-3
Refseq	XP_027930250.1	3e-73	nuclear transcription factor Y subunit B-3-like
Swissprot	Q75IZ7	1e-43	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A444YFJ0	1e-71	A0A444YFJ0_ARAHY; Uncharacterized protein
TrEMBL	A0A4D6KKW9	8e-72	A0A4D6KKW9_VIGUN; Nuclear transcription factor Y
STRING	GLYMA18G08620.1	2e-69	(Glycine max)
STRING	AET00771	2e-69	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-40	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]