PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0075780.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 77aa    MW: 9105.55 Da    PI: 10.2984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0075780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-124772126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     +kt +Cr+f++ G C +G++C+FaHg
  Lj3g3v0075780.1 47 KKTQRCRRFQQHGMCGFGSKCNFAHG 72
                     59***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-114176IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-44673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-94676IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2254674IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-84772IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSSYTNMMMM MMEPQEQPHF KKPKLALPPP PLNHHHHHHH HHHSSFKKTQ RCRRFQQHGM  60
CGFGSKCNFA HGIAELN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0075780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-06C3H family protein