PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0201890.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NF-YC
Protein Properties Length: 134aa    MW: 14949.2 Da    PI: 10.4353
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0201890.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.31.4e-1213951697
            NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                      +  elP  r+kki+ +d++v+++s+ea  l+s + +lf+  l+  s   a ++kr+t++   +  av+r   + dfl+d  p
  Lj3g3v0201890.1 13 ARSPELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLRIAVKRHRpTSDFLLDSLP 95
                     45679***********************************99**************************9975389*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.6E-161780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.27E-151893IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.6E-181895IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAMDSGSAEE EKARSPELPR VRVKKIMTVD KEVQRVSSEA LFLVSLSTQL FLEFLAENSA  60
KIAIDKKRKT VNLEHLRIAV KRHRPTSDFL LDSLPMPLPA HKPDKPTADK PDTAAAAGVG  120
STRRIDHFFR KSDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0201890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337582.11e-51dr1-associated corepressor
TrEMBLA0A3Q7YFI71e-47A0A3Q7YFI7_CICAR; nuclear transcription factor Y subunit C-4
STRINGXP_004502298.12e-48(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-40nuclear factor Y, subunit C13