PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0273570.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 112aa    MW: 12642.7 Da    PI: 11.9585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0273570.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.2e-162451056
              AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +++g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  Lj3g3v0273570.1  2 RNWGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 45
                     57**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-27153IPR001471AP2/ERF domain
CDDcd000185.22E-26153No hitNo description
SMARTSM003807.2E-27158IPR001471AP2/ERF domain
PROSITE profilePS5103219.506152IPR001471AP2/ERF domain
PfamPF008473.2E-10245IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-18252IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFATPEM AARAHDVAAL SIKGHSATLN FPNIAHVLPR  60
PVTCTPRDIQ AAAGAKSRCP HVTSNRRRQK PPPWWSSITH LLCLKQSPLF LS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0273570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078266.16e-41ethylene-responsive transcription factor TINY
RefseqXP_019447850.12e-41PREDICTED: ethylene-responsive transcription factor ERF036-like
SwissprotQ9LYD32e-37DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1J7H8J64e-40A0A1J7H8J6_LUPAN; Uncharacterized protein
STRINGGLYMA13G43210.12e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]