PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0312140.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 231aa    MW: 25941.2 Da    PI: 4.4168
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0312140.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-39521521101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC + rrkC++dC+lapyfp++++++fan+h+lFG+++++k++++l++ +r+dam++++ye++arardPv G+ ++i+ l ++++q+++el
  Lj3g3v0312140.1  52 SCAACTHRRRKCSADCILAPYFPQDRRQQFANAHRLFGVATIIKIIQDLDPITRDDAMTAILYESDARARDPVGGCSRLIMILLSKIAQHQQEL 145
                      6********************************************************************************************* PP

           DUF260  95 allkeel 101
                      ++++++l
  Lj3g3v0312140.1 146 NVIRQQL 152
                      **99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.36851152IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3552149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MENDKDKTAT TSGTVNTPAN NDNTATTSRT PSTAANNDNT TTTSRTATNA RSCAACTHRR  60
RKCSADCILA PYFPQDRRQQ FANAHRLFGV ATIIKIIQDL DPITRDDAMT AILYESDARA  120
RDPVGGCSRL IMILLSKIAQ HQQELNVIRQ QLALRQMMMP QPQQNHPGFQ EEGNGDDERN  180
IPDLNKEDEN DDDDDDDDDD GEKHLPDLNE KDENDDDHDE KHLPDLNKEP K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-265315212111LOB family transfactor Ramosa2.1
5ly0_B2e-265315212111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0312140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015938723.18e-40LOB domain-containing protein 22
RefseqXP_016172519.18e-40LOB domain-containing protein 22
RefseqXP_025677486.18e-40LOB domain-containing protein 22-like
TrEMBLA0A371EEG72e-38A0A371EEG7_MUCPR; LOB domain-containing protein 22 (Fragment)
STRINGGorai.011G064500.16e-38(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-29LOB domain-containing protein 22