PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0323160.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 873aa    MW: 96843.2 Da    PI: 8.0054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0323160.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000277595323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+k F r  nL+ H r H
  Lj3g3v0323160.1 75 CEICNKGFQRDQNLQLHRRGH 95
                     ******************988 PP
2zf-C2H211.90.00071149171123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  Lj3g3v0323160.1 149 WKCEKCSKKYAVQSDWKAHSKTC 171
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.55E-77295No hitNo description
SMARTSM003550.117395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM0035582114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.55E-7144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.20.20.802.2E-105539849IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.06E-86541852IPR017853Glycoside hydrolase superfamily
PfamPF013019.0E-104547849IPR031330Glycoside hydrolase 35, catalytic domain
PRINTSPR007428.4E-38550567IPR001944Glycoside hydrolase, family 35
PRINTSPR007428.4E-38571589IPR001944Glycoside hydrolase, family 35
PRINTSPR007428.4E-38626645IPR001944Glycoside hydrolase, family 35
PRINTSPR007428.4E-38682697IPR001944Glycoside hydrolase, family 35
PROSITE patternPS011820684696IPR019801Glycoside hydrolase, family 35, conserved site
PRINTSPR007428.4E-38775790IPR001944Glycoside hydrolase, family 35
PRINTSPR007428.4E-38811826IPR001944Glycoside hydrolase, family 35
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MSNLTCASGE ASANSSGNKT EITGTDYPQQ CFAPPPSQTQ PPLKRKRNLP GNPDPEAEVV  60
AMSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEIR RKVYVCPEPT  120
CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARVVAI PNNNNSLLPS PTTPSHQMNL QAHQDIIHGG  240
NFSLKKEHQS LIPPWLAPPH SNIDLSSSSS SSIFSQTQNL NHHHHHENPN PRLGPTLPGY  300
QPPAPPAHMS ATALLQKAAQ MGATMTKTGS SSQPMIRTHH MSPSADSATN ANNINNNISS  360
GNFGNLNLST CEDQMVTMTT TTAAAATTGV STSFLHHVMD SFPSGFEGTS FEDTFGPGGI  420
LNSNNKDIDS ITTSVVKGGN NEGLTRDFLG LRPLSHSDIL TIASMGNCMN HDQQNQSQKQ  480
WQASKLLAMA KKRSSKATLL LIFISSIIFF AFVPVFAPLP SLPSHHHTHH SHRNRVNGKF  540
EIASDMFWKD GEPFRIIGGD LHYFRVHPEY WEDRLLKAKA LGLNTIQVYV PWNLHEPTQG  600
KLVFDGVANI ESFLNLCHKL GLLVMVRPGP YICAEWDWGG FPAWFLSMNP SPKPRSSDPN  660
FLQLVERWWG NLLPKFVPLL YQNGGPIIMV QIENEFGSYG DDQAYLHHLV TLARGHLGHD  720
IILYTTDGGS RENLEKGTIR GDTVFSAVDF TTGDNPWPIF KLQKEFNAPG KSPPMSAEFY  780
TGWLTHWGEK IAQTDADSTA AALEEILRKN GSAVLYMVHG GTNFGFYNGA NTGGVDEDDY  840
QPDLTSYDYV RNFNPHVAPS IVNWGGMHIA KLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wez_A3e-9053184924334Beta-galactosidase
3wez_B3e-9053184924334Beta-galactosidase
3wez_C3e-9053184924334Beta-galactosidase
3wez_D3e-9053184924334Beta-galactosidase
3wf0_A3e-9053184924334Beta-galactosidase
3wf0_B3e-9053184924334Beta-galactosidase
3wf0_C3e-9053184924334Beta-galactosidase
3wf0_D3e-9053184924334Beta-galactosidase
3wf1_A3e-9053184924334Beta-galactosidase
3wf1_B3e-9053184924334Beta-galactosidase
3wf1_C3e-9053184924334Beta-galactosidase
3wf1_D3e-9053184924334Beta-galactosidase
3wf2_A3e-9053184924334Beta-galactosidase
3wf2_B3e-9053184924334Beta-galactosidase
3wf2_C3e-9053184924334Beta-galactosidase
3wf2_D3e-9053184924334Beta-galactosidase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.206950.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0323160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935370.0BT093537.1 Soybean clone JCVI-FLGm-24O11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061GB640.0A0A061GB64_THECC; Beta-galactosidase
STRINGEOY271200.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-101indeterminate(ID)-domain 7